is there a way to do it but so it can also show up in moonshell that way there wont be so many folders?
I think if you set the Hidden attribute, the CycloDS OS won't show it. But I'm not sure if Moonshell does or doesn't.
So you want it to be hidden in the CycloDS menu, but not hidden in Moonshell? Both use the Hidden attribute to hide things. I'm not sure if you can do this. Unless Moonshell has an option to not hide Hidden files/folders. Check out the configuration.